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Abstract The fundamental molecules of life are polymers. Prominent examples include nucleic acids and proteins, both of which exhibit a large array of mechanical properties and three-dimensional shapes. The bending rigidity of individual polymers is quantified by the persistence length. The shape of a polymer, dictated by the topology of the polymer backbone, a line trace through the center of the polymer along the contour path, is also an important characteristic. Common biomolecular architectures include linear, cyclic (ring-like), and branched structures; combinations of these can also exist, as in complex polymer networks. Determination of persistence length and shape are largely informative to polymer function and stability in biological environments. Here we demonstratePersistence lengthShapePolymer (PS Poly), a near-fully automated algorithm designed to obtain polymer persistence length and shape from single molecule images obtained in physiologically relevant fluid conditions via atomic force microscopy. The algorithm, which involves image reduction via skeletonization followed by end point and branch point detection, is capable of rapidly analyzing thousands of polymers with subpixel precision. Algorithm outputs were verified by analysis of deoxyribonucleic acid, a very well characterized macromolecule. The method was further demonstrated by application to candidalysin, a recently discovered and complex virulence factor fromCandida albicans. Candidalysin forms polymers of highly variable shape and contour length and represents the first peptide toxin identified in a human fungal pathogen. PS Poly is a robust and general algorithm. It can be used to extract fundamental information about polymer backbone stiffness, shape, and more generally, polymerization mechanisms.more » « less
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Burns, Randy; Chiaro, Dylan; Davison, Harrison; Arendse, Christopher_J; King, Gavin_M; Guha, Suchismita (, Small)Abstract Halide perovskites are hailed as semiconductors of the 21stcentury. Chemical vapor deposition (CVD), a solvent‐free method, allows versatility in the growth of thin films of 3‐ and 2D organic–inorganic halide perovskites. Using CVD grown methylammonium lead iodide (MAPbI3) films as a prototype, the impact of electron beam dosage under cryogenic conditions is evaluated. With 5 kV accelerating voltage, the dosage is varied between 50 and 50000 µC cm−2. An optimum dosage of 35 000 µC cm−2results in a significant blue shift and enhancement of the photoluminescence peak. Concomitantly, a strong increase in the photocurrent is observed. A similar electron beam treatment on chlorine incorporated MAPbI3, where chlorine is known to passivate defects, shows a blue shift in the photoluminescence without improving the photocurrent properties. Low electron beam dosage under cryogenic conditions is found to damage CVD grown 2D phenylethlyammoinum lead iodide films. Monte Carlo simulations reveal differences in electron beam interaction with 3‐ and 2D halide perovskite films.more » « less
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